Jupiter and Saturn are gaseous and so where their atmospheres begin as well as end depends upon arbitrary definitions. The atmospheres of Jupiter and Saturn contain tropospheres (the "weather" forming layer) and stratospheres. The brightly colored stripes seen on the surface of Jupiter and Saturn are due to different cloud layers in the planet. One sees to different depths (and thus to different temperature regions) when one looks at the stripes. The ordering of the colors is Red, White, Brown, and Blue as one moves inward toward higher temperatures. That is, the reddish regions are the coolest, they sit highest up in the atmospheres. Why the stripes are the particular colors they are is not clear however; the color depends upon chemistry which we do not quite have a handle on.
The light colored stripes are known as zones while the darker colored stripes are known as belts. The thin narrow dark stripes which separate the regions are known as bands. Also, we cannot forget the Great Red Spot, which is a large and stable (Robert Hooke discovered the Great Red Spot in the mid 1600s) atmospheric disturbance which exhibits cyclonic motion. In the following section, we address these features in a little more detail.
The interesting patterns and motions seen in the Jovian atmospheres are driven primarily by the large heat flow through the atmospheres (due to flow from the interior and heating by the Sun) and by the rapid rotations of Jupiter and Saturn.
Comment
Recall that a person standing on the equator of the Earth is carried along by the rotation of the Earth with a speed of
On Jupiter, a person standing at the equator is carried along at a speed of
Due to the large diameters of the Jovian planets, the centrifugal forces (and other "rotational" forces) are huge on the Jovian planets.
Also, because different latitudes on Jupiter and Saturn are heated by different amounts, latitudinal motions are also driven (that is, motions from the equator to the poles).
If the effects of rotation were negligible, we would simply have this up and down (more or less vertical) motion and motion straight toward the poles. However, rotation is not negligible and the motion becomes more complicated. To understand what can happen, consider something known as angular momentum.
Let's return to the Great Red Spot
Imagine that there is a low pressure region in the atmosphere. Because of the low pressure, some atmosphere is forced to flow into the low pressure region. What happens?
In the northern hemisphere, the air circulates in the CCW sense as it flows into a low pressure region. In the southern hemisphere the air circulate in the CW sense as it flows into the low pressure region. If we have a high pressure region, the opposite occurs. In the northern hemisphere, the air circulates in the CW sense and in the southern hemisphere it circulates in the CCW sense.
The Great Red Spot is in the southern hemisphere of Jupiter and the air circulates in it in the CCW sense with a period of ~ 6 days. The Great Red Spot may thus be similar to Terrestrial storms (hurricanes) although its nature is not clearly understood. Oh, there are also other Great Dark Spots on other planets, e.g., Neptune