Cooper, E.E. and A. L. Shanks (2011). Latitude and coastline shape correlate with age-structure of Chlorostoma (Tegula) funebralis populations. Marine Ecology Progress Series. 424:133-143.
Shanks, A.L. And R.K. Shearman (2011). Thread-drifting juvenile Mytilus spp. in continental shelf waters off Coos Bay, Oregon USA. Marine Ecology Progress Series. 427:105-115.
Marin Jarrin, J.R. And A.L. Shanks (In Press). Spatio-temporal dynamics of the surf-zone faunal assemblages at a southern Oregon sandy beach. Marine Ecology.
Shanks, A.L., Morgan, S.G. Morgan, J. MacMahan, and A. J.H.M Reniers (2010). Surf zone hydrodynamics as determinants of temporal and spatial variation in larval recruitment. Journal of Experimental Marine Biology and Ecology.392:140-150.
Shanks, A.L., J. A. Miller, and G.C. Roegner (In Press). Predicting the Future Commercial Catch of Dungeness Crabs. California Cooperative Oceanic Fisheries Investigations Reports.
Davidson, T.M., A.L. Shanks, and S. S. Rumrill (2009) The composition and density of fauna utilizing burrow microhabitats created by a non-native burrowing crustacean (Sphaeroma quoianum). Biol. Invasions DOI10.1007/s10530-009-9556-7.
Shanks, A.L. (2009). Barnacle Settlement vs. Recruitment as Indicators of Larval Delivery: Effects of Post-settlement Mortality and Recruit Density. Marine Ecology Progress Series. 385:205-216.
Hodder, J. and A.L. Shanks (2009). Bridging the gap: spanning the distance between high school and college education: Faculty Response. Frontiers in Ecology. 7:221-222.
Shanks, A.L. and C.A. Pfister (2009). Annual recruitment of three species of tidepool fishes is driven by variation in springtime coastal hydrodynamics. Limnology and Oceanography. 54:1481-1487.
Shanks, A.L. and R.K. Shearman (2009) Paradigm lost? Cross-shelf distributions of intertidal invertebrate larvae were unaffected by upwelling or downwelling. Marine Ecology Progress Series. 385:189-204.
Shanks, A.L. (2009). Barnacle Settlement vs. Recruitment as Indicators of Larval Delivery: Time series analysis and Hypothesized Delivery Mechanisms. Marine Ecology Progress Series. 385:217-226.
Shanks, A.L. (2009). Pelagic Larval Duration and Dispersal Distance Revisited. Biological Bulletin. 216:373-385.
Emlet, R.B., S.A. Maslakova, A.L. Shanks, and C.M. Young. 2009. Virtual Symposium: Biology of Marine Invertebrate Larvae.Biological Bulletin. 216:201-202.
Marin Jarrin, J.R., Shanks, A.L., and Banks, M.A. (2009). Confirmation of the presence and use of sandy beach surf-zones by juvenile Chinook salmon. Environmental Biology of Fishes. DOI 10.1007/s10641-009-9470-y.
Davidson, T.M., Rumrill, S.S., and Shanks, A.L.(2008). Colonization and substratum preference of an introduced burrowing crustacean in a temperate estuary. Journal of Experimental Marine Biology and Ecology 354:144-149.
Shanks, A.L. and Roegner, G.C., (2007) Recruitment-limitation in Dungeness crab populations is driven by temporal variation in atmospheric forcing. Ecology 88:1726-1737.
Roegner, G.C., Armstrong, D.A., and Shanks, A.L. (2007). Wind and tidal influences on larval crab recruitment to an Oregon estuary. Marine Ecology Progress Series. 351:177-188.
Shanks, A.L. (2006). Mechanisms of cross-shelf transport of crab megalopae inferred from a time series of daily abundance. Marine Biology 148:1383-1398.
Shanks, A.L. and L. Brink (2005, Feature Article). Upwelling, downwelling, and cross-shelf transport of bivalve larvae: test of a hypothesis. Marine Ecology Progress Series. 302:1-12
Miller, J. A., M. A. Banks, D. Gomez-Uchida, and A. L. Shanks. (2005). A comparison of population structure in black rockfish (Sebastes melanops) as determined with otolith microchemistry and microsatellite DNA. Canadian Journal of Fisheries and Aquatic Sciences, 62:2189-2198.
Miller, J. A. and A. L. Shanks. (2005). Abundance and distribution of larval and juvenile fish in Coos Bay, Oregon: a time-series analysis based on light trap collections. Marine Ecology Progress Series 305:177-191.
Shanks, A.L. and Eckert, G. (2005). Life-History Traits and Population Persistence of California Current Fishes and Benthic Crustaceans; Solution of A Marine Drift Paradox. Ecological Monographs 75:505-524.
Miller, J. A. and A. L. Shanks. (2004). Evidence for limited larval dispersal in black rockfish (Sebastes melanops): Implications for population structure and marine reserve design. Canadian Journal of Fisheries and Aquatic Sciences 61:1723-1735.
Miller, J.A. and Shanks, A.L. (2004). Ocean-estuary coupling in the Oregon upwelling region: the abundance and transport of juvenile fish and larval invertebrates. Marine Ecology Progress Series 271:267-279.
McCulloch, A.A. and Shanks, A.L. (2003). Topographically generated fronts, very nearshore oceanography and the settlement of mussel larvae and barnacle cyprids. Journal of Plankton Research 25:1427-1439.
Shanks, A. L., McCulloch, A.A., and Miller, J. (2003). Topographically generated fronts, very nearshore oceanography and the distribution of larval invertebrates and holoplankters. Journal of Plankton Research. 25:1251-1277.
Shanks, A. L., McCulloch, A.A. (2003) Fortnightly Periodicity in the Abundance of Diatom and Dinoflagellate Taxa at a Coastal Study Site. Journal of Experimental Marine Biology and Ecology 296:113-126.
Shanks, A.L. and McCulloch, A.A. (2003). Topographically Generated Fronts, Very Nearshore Oceanography and The Distribution of Chlorophyll, Detritus and Selected Diatom and Dinoflagellate Taxa. Marine Biology 143:969-980.
Roegner, G.C., Armstrong, D.A., Hickey, B.M., and Shanks, A.L. (2003). Ocean distribution and recruitment of Dungeness crab megalopae to estuaries in southern Washington State. Estuaries 26(4b):1058-1070.
Shanks, A.L., Largier, J., and Brubaker, J. (2003). Observations on the distribution of meroplankton during an upwelling event. Journal of Plankton Res. 25: 645-667.
Johnson, K.B. and A.L. Shanks. (2003). Low rates of predation on planktonic
marine invertebrate larvae. Marine Ecology Progress Series. 248: 125-139.
Shanks, A.L., Grantham, B., and Carr, M. (2003). Propagule Dispersal Distance and the Size and Spacing of Marine Reserves. Ecological Applications 13: S159-S169.
Grantham, B.A., G.L. Eckert, and A.L. Shanks (2003). Dispersal potential of
marine invertebrates in diverse habitats Ecological Applications 13: S108- S116.
Sponaugle, S, Cowen, R.K., Shanks, A.L., Morgan, S.G., Leis, J.M., Pineda, J., Boehlert, G.W., Kingsford, M.J., Lindeman, K., Grimes, C., and Munro, J.L. (2002). Predicting self-recruitment in marine populations: Biophysical correlates and mechanisms. Bulletin of Marine Science.
70(1) Suppl.: 341-375.
Johnson, J. and A.L. Shanks (2002). Time series of the Abundance of the Post larvae of the crabs Cancer magister and Cancer spp. on the Southern Oregon Coast and their cross-shelf transport. Estuaries 25: 1138-1142.
Shanks, A. L. (2002) Internal Tides and the Biology of Continental Shelf Waters. In: The Oceanography and Ecology of the Nearshore and Bays in Chile. Eds. Juan C. Castilla and John L. Largier. Ediciones Universidad Catolica de Chile, Santiago, Chile. pp. 3-27.
Shanks, A.L. (2002). The Abundance, Vertical Flux, and Still Water Gravitational and in situ Sinking Rates of Marine Snow in a Shallow Coastal Water Column. Continental Shelf Research. 22: 2045-2064.
Shanks, A.L., J. Largier, L. Brink, J. Brubaker and R. Hoff. (2002). Observations on the distribution of meroplankton during a downwelling event and associated intrusion of the Chesapeake Bay estuarine plume. Journal of Plankton Res. 24: 391-416.
Kingsford, M. J., J. Leis, A. L. Shanks K. Lindeman, S. Morgan and J. Pineda (2002). Sensory Environments, larval abilities and local self-recruitment. Bulletin of Marine Science. 70(1) Suppl.: 309-340
Roegner, G.C., Hickey, B., Newton, J., Shanks, A.L., and Armstrong, D. (2002). Wind-induced plume and bloom intrusions into Willapa Bay, Washington. Limnology and Oceanography. 47: 1033-1042
Shanks, A.L. (2002). Previous Agonistic Experience Determines the Pattern of Foraging in Territorial and Non-territorial Lottia gigantea (Sowerby). Behavioral Ecology 13: 467-471.
Roegner, G.C. and A.L. Shanks (2001). Import of coastally-derived chlorophyll a to South Slough, Oregon. Estuaries. 24: 244-256.
Shanks, A.L., J. Largier, L. Brink, J. Brubaker and R. Hoff. (2000). Demonstration of the onshore transport of larval invertebrates by the shoreward movement of an upwelling front. Limnology and
Oceanography. 45: 230-236
Amend, M. and A.L. Shanks. 1999. The timing of larval release in the mole crab. Emerita talpoida. Marine Ecology Progress Series. 183: 295-300.
Shanks, A.L. 1998. Abundance of post-larval Callinectes sapidus, Penaeus spp., Uca spp., and Labinia spp. collected at an outer coastal site and their cross-shelf transport. Marine Ecology Progress Series. 168: 57-69.
Shanks, A.L. 1998. Apparent oceanographic triggers to the spawning of the limpet Lottia digitalis. Journal of Experimental Marine Biology and Ecology. 222: 31-42.
Johnson, K.B. and Shanks, A.L. 1997. Predation upon meroplankton: Assessing the risk at near-natural prey densities and in the presence of background plankton. Marine Ecology Progress Series. 158: 293-296.
Shanks, A.L. and K. Walters. 1997. Holoplankton, meroplankton, and meiofauna associated with marine snow. Marine Ecology Progress Series. 156: 75-86.
Shanks, A.L. and K. del Carmen. 1997. Larval polychaetes are strongly associated with marine snow. Marine Ecology Progress Series. 154: 211-221.
Shanks, A.L. and K. Walters. 1996. The feeding of a heterotrophic dinoflagellate (Noctiluca) in marine snow. Limnology and Oceanography 41: 177-181.
Walters, K. and A.L. Shanks. 1996. Complex trophic and nontrophic interactions between meiobenthic copepods and marine snow. Journal of Experimental Marine Biology and Ecology. 198: 131-145.
Larson, E.T. and A.L. Shanks. 1996. The consumption of marine snow by juvenile stripped and white mullet. Marine Ecology Progress Series. 130: 19-28.
Shanks, A.L. 1995. Mechanisms of cross-shelf dispersal of larval invertebrates and fish. In: Ecology of Marine Invertebrate Larvae. Ed. L.R. McEdward. CRC Press Inc. Boca Raton, Florida, pp. 323-368.
Shanks, A.L. 1995. Orientated swimming by megalopae of several eastern North Pacific crab species and its potential role in their onshore migration. Journal of Experimental Marine Biology and Ecology. 186: 1-17
Wright, W.G. and A.L. Shanks. 1995. Interspecific association between bail-out behavior and habitat is geographically and phylogenetically widespread. Journal of Experimental Marine Biology and Ecology.188: 133-143.
Wright, W.G. and A.L. Shanks. 1993. Previous experience determines territorial behavior in Lottia gigantea, an archaeogastropod limpet. Journal of Experimental Marine Biology and Ecology.166: 217-229.
Shanks, A.L. and M. Reeder. 1993. Reducing microzones and sulfide production in marine snow. Marine Ecology Progress Series. 96: 43-47.
Shanks, A.L. and E.W. Edmondson. 1990. Vertical flux of metazoans (holoplankton, meiofauna, and larval invertebrates) due to their association with marine snow. Limnology and Oceanography 35: 455-463.
Shanks, A.L. and E. W. Edmondson. 1989. Laboratory-made marine snow: A biological model of the real thing. Marine Biology 101: 463-470.
Shanks, A.L. 1988. Further support for the hypothesis that internal waves can transport larvae of invertebrates and fish onshore. Fisheries Bulletin 86 (4): 703-714.
Shanks, A.L. and W.M. Graham. 1988. Chemical defense in a scyphomedusa.
Marine Ecology Progress Series. 45: 81-86.
Shanks, A.L. 1987. Mechanisms of cross-shelf larval transport. p.15-28. In Signposts in the Sea. W.F. Herrnkind (Ed). Dept. of Biological Science, Florida State University, Tallahassee.
Shanks, A.L. and W. G. Wright. 1987. Internal-wave-mediated shoreward transport of cyprids, megalopae, and gammarids and correlated longshore differences in the settling rate of intertidal barnacles. Journal of Experimental Marine Biology and Ecology. 114: 1-13.
Wells, J.T. and A.L. Shanks. 1987. Observations and geologic significance of marine snow in a shallow-water, partially-enclosed marine embayment. Journal of Geophysical Research 92(C12): 13,185-13,190.
Shanks, A.L. 1987. The onshore transport of an oil spill by internal waves. Science 235: 1198-1200.
Shanks, A.L. and W. M. Graham. 1987. Orientated swimming in the jellyfish Stomolophus meleagris L. Agassiz (Scyphozoan, Rhizostomida). Journal of Experimental Marine Biology and Ecology. 108: 159-169.
Shanks, A.L. 1986. Vertical migration and cross-shelf dispersal of larval Cancer spp. and Randallia ornata (Crustacea, Brachyura) off the coast of southern California. Marine Biology 92: 189-200.
Shanks, A.L. 1986. Tidal periodicity in the daily settlement of intertidal barnacle larvae and an hypothesized mechanism for the cross-shelf transport of cyprids. Biological Bulletin 170: 429-440.
Shanks, A.L. and W.G. Wright. 1986. Adding teeth to wave action: The destructive effects of wave-borne rocks on intertidal organisms. Oecologia. 69: 420-428.
Shanks, A.L., W.G. Wright, and G. Maltz. 1986. What triggers "bail out" in the limpet Lottia gigantea. Marine Behavior Physiology 12: 71-79.
Beers, J.R., J.D. Trent, F.M.H. Reid, and A.L. Shanks. 1986. Macroaggregates and their phytoplanktonic components in the Southern California Bight. Journal of Plankton Research 8: 475-487.
Shanks, A.L. 1985. The behavioral basis of internal wave induced shoreward transport of the megalopae of Pachygrapsus crassipes. Marine Ecology Progress Series. 24: 289-295.
Shanks, A.L. 1983. Surface slicks associated with tidally forced internal waves may transport pelagic larvae of benthic invertebrates and fishes shoreward. Marine Ecology Progress Series. 13: 311-315.
Shanks, A.L. and J.D. Trent. 1980. Marine snow: Sinking rates and role in vertical flux. Deep-Sea Research 27A: 137-143.
Shanks, A.L. and J.D. Trent. 1979. Marine snow: Microscale nutrient patches. Limnology and Oceanography 24: 850-854.
Trent, J.D., A.L. Shanks, and M.W. Silver. 1978. In Situ and laboratory measurements on macroscopic aggregates in Monterey Bay, California. Limnology and Oceanography 23: 626-635.
Silver, M.W., A.L. Shanks, and J.D. Trent. 1978. Marine snow: Microplankton habitat and source of small-scale patchiness in pelagic populations. Science 201: 371-373.
Mattison, J.E., J.D. Trent, A.L. Shanks, T.B. Akin, and J.S. Pearse. 1977.
Movement and feeding activity of Red Sea urchins (Strongylocentrotus franciscanus) adjacent to a kelp forest. Marine Biology 39: 25-30.
